Day 2: Advanced Single-cell Analysis and Spatial Omics

Day 2: Advanced Single-cell Analysis and Spatial Omics#

Welcome to Day 2 of the workshop! Today we’ll focus on advanced single-cell analysis techniques and spatial omics using various tools from the scverse ecosystem.

Notebooks#

Morning Session: Advanced Single-cell Analysis#

  1. Ligand-Receptor Interactions

    • Learn how to analyze cell-cell communication

    • Identify significant ligand-receptor pairs

    • Visualize and interpret interaction networks

  2. Differential Cellular Abundance

    • Understand methods for comparing cell type proportions

    • Learn statistical approaches for differential abundance

    • Visualize and interpret changes in cell populations

Afternoon Session: Spatial Analysis#

  1. Spatial Analysis

    • Introduction to spatial transcriptomics concepts

    • Learn how to process and analyze spatial data

    • Explore spatial patterns and interactions

    • Apply advanced spatial analysis techniques

Contents