scirpy.pl.alpha_diversity¶
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scirpy.pl.alpha_diversity(adata, groupby, *, target_col='clone_id', vistype='bar', **kwargs)¶ Plot the alpha diversity per group.
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Plot the alpha diversity per group.
Calls
scirpy.tl.alpha_diversity().- Parameters
- adata :
AnnDataAnnData Annotated data matrix. Will execute
scirpy.tl.alpha_diversity()on-the-fly.- groupby :
strstr Column of
obsby which the grouping will be performed- target_col :
strstr(default:'clone_id') Column on which to compute the alpha diversity
- vistype : {‘bar’}
Literal[‘bar’] (default:'bar') Visualization type. Currently only ‘bar’ is supported.
- **kwargs
Additional parameters passed to
scirpy.pl.base.bar()
- adata :
- Return type