Plotting: pl#

pl.tsse(adata[, min_fragment, width, height])

Plot TSS enrichment against unique fragment counts.

pl.umap(adata[, color, use_rep, ...])

Plot a two- or three-dimensional UMAP embedding.

pl.motif_enrichment(enrichment[, ...])

Plot motif enrichment scores across groups.

pl.regions(adata, groupby, peaks[, width, ...])

Plot grouped accessibility over selected peak regions.

pl.coverage(adata, region, groupby[, out_file])

Plot coverage tracks for grouped cells across one genomic region.

pl.spectral_eigenvalues(adata[, width, ...])

Plot spectral embedding eigenvalues and mark the elbow.

pl.network_edge_stat(network, **kwargs)

Plot edge score distributions by source and target node type.

pl.render_plot(fig[, width, height, ...])

Render, display, or save a Plotly figure.