snapatac2.datasets.Meuleman_2020

snapatac2.datasets.Meuleman_2020()

Fetch grouped transcription factor motifs from Meuleman 2020.

Use these curated motifs from [Meuleman20] to scan genomic sequences or run motif enrichment. Each returned motif has name set to the parsed motif name and family set to the motif-family label parsed from the motif identifier.

Returns:

Motif objects with populated name and family attributes.

Return type:

list[PyDNAMotif]

See also

motif_enrichment

compute motif enrichment.

Examples

>>> import snapatac2 as snap
>>> motifs = snap.datasets.Meuleman_2020()
>>> hasattr(motifs[0], "family")
True