Metrics#

Quality Control#

metrics.frag_size_distr(adata, *[, ...])

Compute the dataset-level fragment size distribution.

metrics.tsse(adata, gene_anno, *[, ...])

Compute transcription start site enrichment for each cell.

metrics.frip(adata, regions, *[, ...])

Compute fraction of reads or insertions in selected regions.

metrics.summary_by_chrom(adata, *[, mode, ...])

Compute per-cell summary statistics for each chromosome.