Examples#
Examples from real datasets you’d actually analyse.
Visium mouse brain
Render H&E tissue, overlay spots, color by gene expression and by cluster, and finish with a publication-style figure.
Interactive region annotation
Draw regions of interest directly on a spatialdata-plot canvas with
sdata.pl.annotate(...) and persist them as a ShapesModel element.
Point density maps
Turn tens of millions of Xenium transcripts into a readable density
heatmap with render_points(density=True), reshape it with density_how,
and draw a separate density per gene.