Gallery#
Runnable examples demonstrating spatialdata-plot on real spatial-omics
datasets and on the lightweight blobs dataset.
Sources live in
scverse/spatialdata-plot-notebooks;
every notebook is executable end-to-end and re-executed on a weekly schedule
against the latest spatialdata-plot release.
Tutorials#
Entry-point material for learning the API on synthetic data.
Getting started
The fluent .pl API, layering, and styling on the in-memory blobs
dataset. Ideal first read.
Examples#
Worked examples on real datasets you’d actually analyse.
Visium mouse brain
Render H&E tissue, overlay spots, color by gene expression and by cluster, and finish with a publication-style figure.