scirpy.io.IrCell¶

class scirpy.io.IrCell(cell_id, *, multi_chain=False)¶

Data structure for a Cell with immune receptors.

An IrCell can hold multiple IrChains.

Parameters

cell_id : strstr: cell id or barcode. Needs to match the cell id used for transcriptomics data (i.e. the adata.obs_names)
multi_chain : boolbool (default: False): explicitly mark this cell as Multichain-cell. Even if this is set to False, scirpy.io.from_ir_objs() will consider the cell as multi chain, if it has more than two VJ or VDJ chains. However, if this is set to True, the function will consider it as multi-chain regardless of the number of chains.

Attributes

Methods