scirpy.datasets.wu2020_3k¶
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scirpy.datasets.wu2020_3k()¶ Return the dataset from [WMdA+20] as AnnData object, downsampled to 3000 TCR-containing cells.
This is how the dataset was processed:
import scanpy as sc adata = sc.read_h5ad("wu2020.h5ad") adata = adata[adata.obs["has_tcr"] == "True", :] sc.pp.subsample(adata, n_obs=3000) adata.write_h5ad("wu2020_3k.h5ad")