scirpy.ir_dist.metrics.ParallelDistanceCalculator
- class scirpy.ir_dist.metrics.ParallelDistanceCalculator(cutoff, *, n_jobs=None, block_size=50)
Abstract base class for a DistanceCalculator that computes distances in parallel.
It does so in a blockwise fashion. The function computing distances for a single block needs to be overriden.
- Parameters
- n_jobs :
int|NoneOptional[int] (default:None) Number of jobs to use for the pairwise distance calculation. If None, use all jobs (only for ParallelDistanceCalculators).
- block_size :
int|NoneOptional[int] (default:50) The width of a block of the matrix that will be delegated to a worker process. The block contains
block_size ** 2elements.
- n_jobs :
Attributes
The sparse matrix dtype.
Methods
calc_dist_mat(seqs[, seqs2])Calculate the distance matrix.
squarify(triangular_matrix)Mirror a triangular matrix at the diagonal to make it a square matrix.