scirpy.io.to_airr_cells

scirpy.io.to_airr_cells(adata, *, airr_mod='airr', airr_key='airr')

Convert an adata object with IR information back to a list of AirrCell objects. Inverse function of from_airr_cells().

Parameters

adata : AnnData | MuData | DataHandlerUnion[AnnData, MuData, DataHandler]

AnnData or MuData object that contains AIRR information.

airr_mod : str (default: 'airr')

Name of the modality with AIRR information is stored in the MuData object. if an AnnData object is passed to the function, this parameter is ignored.

airr_key : str (default: 'airr')

Key under which the AIRR information is stored in adata.obsm as an awkward array.

Return type

List[AirrCell]

Returns

List of AirrCell objects.