snapatac2.PyDNAMotifScanner

class snapatac2.PyDNAMotifScanner

Python object for scanning DNA sequences with a motif.

Attributes

id	The unique identifier of the motif.
name	The name of the motif.

Methods

exist(seq[, pvalue, rc])	Check if the motif exists in the given sequence above the specified p-value threshold.
exists(seqs[, pvalue, rc])	Batch check if the motif exists in the given sequences above the specified p-value threshold.
find(seq[, pvalue])	Find motif occurrences in the given sequence above the specified p-value threshold.
with_background(seqs[, pvalue])	Create a motif test object using background sequences.