scverse Foundational tools for single-cell omics data analysis
Core projects
anndata

Standard for annotated matrices

mudata

Multimodal data format

scanpy

Single-cell analysis framework

muon

Multi-omics analysis framework

scvi-tools

Single-cell machine learning framework

scirpy

Single-cell immune sequencing analysis framework

squidpy

Spatial single cell analysis

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Mission

scverse is a consortium of foundational tools (mostly in Python) for omics data in life sciences. It has been founded to ensure the long-term maintenance of these core tools.

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Team

scverse is a community project currently governed by the developers of the core packages. Please reach out if you’d like to be involved!

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References